SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    27, 16, 17, 20, 194, 1438, 13, 23, 71, 196, 
    199, 343, 31, 79, 89
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00088

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "19.06"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 34,
        "rows_produced_per_join": 6,
        "filtered": "19.99",
        "index_condition": "(`testdobroded`.`cscart_product_prices`.`product_id` in (27,16,17,20,194,1438,13,23,71,196,199,343,31,79,89))",
        "cost_info": {
          "read_cost": "18.38",
          "eval_cost": "0.68",
          "prefix_cost": "19.06",
          "data_read_per_join": "163"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`testdobroded`.`cscart_product_prices`.`lower_limit` = 1) and (`testdobroded`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
13 1039.00000000
16 529.00000000
17 529.00000000
20 529.00000000
23 329.00000000
27 359.00000000
31 4095.00000000
71 13245.00000000
79 529.00000000
89 309.00000000
194 279.00000000
196 279.00000000
199 279.00000000
343 329.00000000
1438 419.00000000